LOC103134631 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103134631

Membrane associated guanylate kinase, WW and PDZ domain containing 3b. (1130 aa)

Predicted Functional Partners:

LOC103129219

0.882

LOC103131252

0.882

LOC103135024

0.882

ENSPFOP00000005239

0.882

uckl1

0.882

uck1

0.882

LOC103140018

0.882

LOC103139830

0.882

ctnnb1

0.882

LOC103153988

0.872

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000005239	LOC103134631	ENSPFOP00000005239	ENSPFOP00000016086	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.882
ENSPFOP00000005239	LOC103139830	ENSPFOP00000005239	ENSPFOP00000016229	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.721
ENSPFOP00000005239	LOC103140018	ENSPFOP00000005239	ENSPFOP00000009595	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.721
ENSPFOP00000005239	uck1	ENSPFOP00000005239	ENSPFOP00000006184	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.721
LOC103129219	LOC103134631	ENSPFOP00000001494	ENSPFOP00000016086	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.882
LOC103129219	LOC103139830	ENSPFOP00000001494	ENSPFOP00000016229	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.720
LOC103129219	LOC103140018	ENSPFOP00000001494	ENSPFOP00000009595	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.720
LOC103129219	uck1	ENSPFOP00000001494	ENSPFOP00000006184	Uridine-cytidine kinase; Belongs to the uridine kinase family.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.721
LOC103131252	LOC103134631	ENSPFOP00000003396	ENSPFOP00000016086	Junction plakoglobin a.	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	0.882
LOC103131252	ctnnb1	ENSPFOP00000003396	ENSPFOP00000018677	Junction plakoglobin a.	Catenin (cadherin-associated protein), beta 1.	0.977
LOC103134631	ENSPFOP00000005239	ENSPFOP00000016086	ENSPFOP00000005239	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.882
LOC103134631	LOC103129219	ENSPFOP00000016086	ENSPFOP00000001494	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.882
LOC103134631	LOC103131252	ENSPFOP00000016086	ENSPFOP00000003396	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Junction plakoglobin a.	0.882
LOC103134631	LOC103135024	ENSPFOP00000016086	ENSPFOP00000003743	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Uncharacterized protein.	0.882
LOC103134631	LOC103139830	ENSPFOP00000016086	ENSPFOP00000016229	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.882
LOC103134631	LOC103140018	ENSPFOP00000016086	ENSPFOP00000009595	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.882
LOC103134631	LOC103153988	ENSPFOP00000016086	ENSPFOP00000007990	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Immunoglobulin superfamily, member 5b.	0.872
LOC103134631	ctnnb1	ENSPFOP00000016086	ENSPFOP00000018677	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Catenin (cadherin-associated protein), beta 1.	0.882
LOC103134631	uck1	ENSPFOP00000016086	ENSPFOP00000006184	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.882
LOC103134631	uckl1	ENSPFOP00000016086	ENSPFOP00000006033	Membrane associated guanylate kinase, WW and PDZ domain containing 3b.	Uridine-cytidine kinase; Belongs to the uridine kinase family.	0.882