LOC103133539 protein (Poecilia formosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103133539

Uncharacterized protein. (1860 aa)

Predicted Functional Partners:

itgb4

0.798

ENSPFOP00000028219

0.674

plod2

0.641

LOC103129610

0.641

plod1

0.641

ENSPFOP00000001648

0.596

ENSPFOP00000005957

0.596

p4ha3

0.591

ENSPFOP00000000437

0.588

col6a2

0.588

Your Current Organism:

Poecilia formosa

NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPFOP00000000437	ENSPFOP00000001648	ENSPFOP00000000437	ENSPFOP00000001648	Uncharacterized protein.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	0.576
ENSPFOP00000000437	ENSPFOP00000005957	ENSPFOP00000000437	ENSPFOP00000005957	Uncharacterized protein.	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	0.576
ENSPFOP00000000437	ENSPFOP00000028219	ENSPFOP00000000437	ENSPFOP00000028219	Uncharacterized protein.	Uncharacterized protein.	0.674
ENSPFOP00000000437	LOC103129610	ENSPFOP00000000437	ENSPFOP00000016601	Uncharacterized protein.	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.	0.641
ENSPFOP00000000437	LOC103133539	ENSPFOP00000000437	ENSPFOP00000016142	Uncharacterized protein.	Uncharacterized protein.	0.588
ENSPFOP00000000437	itgb4	ENSPFOP00000000437	ENSPFOP00000018672	Uncharacterized protein.	Integrin beta.	0.846
ENSPFOP00000000437	p4ha3	ENSPFOP00000000437	ENSPFOP00000007676	Uncharacterized protein.	Prolyl 4-hydroxylase, alpha polypeptide III.	0.606
ENSPFOP00000000437	plod1	ENSPFOP00000000437	ENSPFOP00000017563	Uncharacterized protein.	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.	0.641
ENSPFOP00000000437	plod2	ENSPFOP00000000437	ENSPFOP00000014249	Uncharacterized protein.	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.	0.641
ENSPFOP00000001648	ENSPFOP00000000437	ENSPFOP00000001648	ENSPFOP00000000437	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Uncharacterized protein.	0.576
ENSPFOP00000001648	LOC103133539	ENSPFOP00000001648	ENSPFOP00000016142	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Uncharacterized protein.	0.596
ENSPFOP00000001648	col6a2	ENSPFOP00000001648	ENSPFOP00000015143	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.	Collagen, type VI, alpha 2.	0.576
ENSPFOP00000005957	ENSPFOP00000000437	ENSPFOP00000005957	ENSPFOP00000000437	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	Uncharacterized protein.	0.576
ENSPFOP00000005957	LOC103133539	ENSPFOP00000005957	ENSPFOP00000016142	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	Uncharacterized protein.	0.596
ENSPFOP00000005957	col6a2	ENSPFOP00000005957	ENSPFOP00000015143	Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.	Collagen, type VI, alpha 2.	0.576
ENSPFOP00000028219	ENSPFOP00000000437	ENSPFOP00000028219	ENSPFOP00000000437	Uncharacterized protein.	Uncharacterized protein.	0.674
ENSPFOP00000028219	LOC103133539	ENSPFOP00000028219	ENSPFOP00000016142	Uncharacterized protein.	Uncharacterized protein.	0.674
ENSPFOP00000028219	col6a2	ENSPFOP00000028219	ENSPFOP00000015143	Uncharacterized protein.	Collagen, type VI, alpha 2.	0.674
ENSPFOP00000028219	itgb4	ENSPFOP00000028219	ENSPFOP00000018672	Uncharacterized protein.	Integrin beta.	0.404
LOC103129610	ENSPFOP00000000437	ENSPFOP00000016601	ENSPFOP00000000437	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.	Uncharacterized protein.	0.641