STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000016149Chromodomain helicase DNA binding protein 1-like. (1012 aa)    
Predicted Functional Partners:
ENSPFOP00000002611
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
   
 0.947
xpa
Xeroderma pigmentosum, complementation group A.
    
 0.920
pole3
Polymerase (DNA directed), epsilon 3 (p17 subunit).
    
 0.913
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
    
 0.864
parp2
Poly [ADP-ribose] polymerase.
   
 0.862
ENSPFOP00000011949
Bromodomain adjacent to zinc finger domain, 2A.
    
 0.852
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 0.852
ENSPFOP00000029505
MBD domain-containing protein.
    
 0.852
BAZ2B
Bromodomain adjacent to zinc finger domain 2B.
    
 0.852
LOC103154421
Histone H2A; Belongs to the histone H2A family.
   
 0.850
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.