STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103142797Uncharacterized protein; Belongs to the tropomyosin family. (284 aa)    
Predicted Functional Partners:
ENSPFOP00000014266
Troponin T type 2b (cardiac).
   
 0.965
ACTA1
Actin alpha 1, skeletal muscle.
   
 0.965
ENSPFOP00000002935
Troponin T type 2a (cardiac).
   
 0.964
ENSPFOP00000013079
Uncharacterized protein.
   
 0.963
ACTC1
Zgc:86709.
   
 0.955
LOC103136121
Actin alpha cardiac muscle 1a.
   
 0.952
LOC103136121-2
Actin, alpha cardiac.
   
 0.952
myl1
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.900
ENSPFOP00000002052
Uncharacterized protein.
   
 0.859
ENSPFOP00000020970
Troponin T2c, cardiac.
   
 0.852
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.