STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vstm4V-set and transmembrane domain containing 4b. (323 aa)    
Predicted Functional Partners:
ENSPFOP00000005273
Malate synthase-like.
   
 
 0.762
espl1
Extra spindle pole bodies like 1, separase.
   
 0.637
pidd1
P53-induced death domain protein 1.
    
  0.603
ENSPFOP00000003361
Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.
    
 0.591
ripk4
Receptor-interacting serine-threonine kinase 4.
    
 0.591
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 0.576
ENSPFOP00000020856
Uncharacterized protein.
    
 0.572
LOC103144499
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.527
ENSPFOP00000000649
Polo-like kinase 4 (Drosophila).
   
 0.527
LOC103154402
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.527
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.