STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103133769Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (794 aa)    
Predicted Functional Partners:
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.809
PLXND1
Plexin D1.
    
 0.793
ENSPFOP00000000181
Neuropilin; Belongs to the neuropilin family.
    
 0.729
mst1r
Macrophage stimulating 1 receptor b.
    
 0.707
LOC103150629
MET proto-oncogene, receptor tyrosine kinase.
    
 0.707
LOC103137246
Macrophage stimulating 1 receptor a.
    
 0.707
met
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.707
ENSPFOP00000000442
Plexin_cytopl domain-containing protein.
    
 0.677
ENSPFOP00000008426
Sema domain-containing protein.
    
 0.677
ENSPFOP00000024890
Sema domain-containing protein.
    
 0.677
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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