STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103155266RBR-type E3 ubiquitin transferase. (425 aa)    
Predicted Functional Partners:
ENSPFOP00000006528
Uncharacterized protein.
    
 
 0.687
LOC103133957
Androgen receptor.
    
 
 0.687
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
     
 0.512
dus2
Dihydrouridine synthase 2.
    
 
 0.497
atp5po
ATP synthase peripheral stalk subunit OSCP.
    
   0.483
etf1
Eukaryotic translation termination factor 1b.
    
 
 0.480
arih1
RBR-type E3 ubiquitin transferase.
     
0.469
rnf217
RBR-type E3 ubiquitin transferase.
     
0.469
crebrf
Creb3 regulatory factor.
    
 
 0.446
UBA3
Ubiquitin like modifier activating enzyme 3.
   
 
  0.429
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.