STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)    
Predicted Functional Partners:
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
0.999
snrpg
Small nuclear ribonucleoprotein G.
   
 0.999
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
LSM10
LSM10, U7 small nuclear RNA associated.
   
 0.999
ENSPFOP00000021005
Sm domain-containing protein.
   
 0.999
ENSPFOP00000006735
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.998
prpf8
Pre-mRNA processing factor 8.
   
 0.998
ENSPFOP00000009459
Small nuclear ribonucleoprotein polypeptide A.
   
 0.998
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.