STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000023784UBP-type domain-containing protein. (169 aa)    
Predicted Functional Partners:
ubb
Ubiquitin B.
    
 0.786
ercc1
Excision repair cross-complementation group 1.
    
 0.720
rps27a
Ribosomal protein S27a.
    
  0.703
LOC103132215
Ubiquitin-like domain-containing protein.
    
  0.698
mysm1
Myb-like, SWIRM and MPN domains 1.
   
  
 0.647
ENSPFOP00000000961
FA core complex associated protein 24.
    
 0.536
zfand4
Zinc finger, AN1-type domain 4.
    
 0.535
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.530
ENSPFOP00000013171
Ubiquitin-like domain-containing protein.
    
  0.530
LOC103142874
Uncharacterized protein.
    
  0.530
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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