STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPFOP00000024691PID domain-containing protein. (488 aa)    
Predicted Functional Partners:
LOC103129518
Uncharacterized protein.
 
      0.888
ENSPFOP00000001833
RAB GTPase activating protein 1-like 2.
 
      0.649
ENSPFOP00000005970
RAB guanine nucleotide exchange factor (GEF) 1.
   
  0.643
LOC103136325
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
  0.643
LOC103135347
Uncharacterized protein.
   
  0.643
LOC103151367
RAB6B, member RAS oncogene family a.
    
 0.602
RAB6B
RAB6B, member RAS oncogene family.
    
 0.602
RAB41
RAB41, member RAS oncogene family.
    
 0.602
rab6a
RAB6A, member RAS oncogene family.
    
 0.602
rab34
RAB34, member RAS oncogene family a.
    
 0.511
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.