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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tgfbiTransforming growth factor, beta-induced. (559 aa)    
Predicted Functional Partners:
pts
6-pyruvoyl tetrahydrobiopterin synthase.
    
  0.627
LOC106938145
Uncharacterized protein.
    
 
 0.619
NDUFS8
NADH:ubiquinone oxidoreductase core subunit S8.
    
 
 0.619
lum
Lumican.
   
  
 0.608
ndufs3
NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.
    
   0.597
ggcx
Gamma-glutamyl carboxylase.
      
 0.590
LOC106952136
Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family.
      
 0.589
rp9
RP9 pre-mRNA splicing factor.
      
 0.589
alpl
Alkaline phosphatase.
     
 0.560
LOC106948497
Alkaline phosphatase.
     
 0.560
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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