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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000000035Uncharacterized protein. (102 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.993
nbr1
NBR1 autophagy cargo receptor a.
    
 0.988
LOC106939540
TANK-binding kinase 1.
    
 0.981
gabarap
GABA(A) receptor-associated protein b.
   
 0.978
LOC106949313
GABA type A receptor associated protein like 2.
   
 0.970
gabarapl2
GABA(A) receptor-associated protein like 2.
   
 0.970
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.969
LOC106952576
Zgc:92606.
   
 0.968
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
   
 0.968
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.968
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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