STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube2d3UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)    
Predicted Functional Partners:
LOC106952860
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.985
trip12
Thyroid hormone receptor interactor 12.
   
 0.967
rps27a
Ribosomal protein S27a.
   
 0.915
anapc11
APC11 anaphase promoting complex subunit 11 homolog (yeast).
    
 0.912
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.893
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.886
fancm
Uncharacterized protein.
    
 0.880
cul1
Cullin 1b; Belongs to the cullin family.
   
 0.872
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
 0.865
ENSPLAP00000015559
Ubiquitin-like domain-containing protein.
   
 0.859
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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