ENSPLAP00000000046 protein (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPLAP00000000046

UBIQUITIN_CONJUGAT_2 domain-containing protein. (149 aa)

Predicted Functional Partners:

LOC106952860

0.990

rnf41

0.980

rps27a

0.978

map1lc3b

0.968

map1lc3a

0.968

casp9

0.967

uba1

0.962

LOC106949458

0.962

uba6

0.962

LOC106949313

0.949

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000000046	LOC106949313	ENSPLAP00000000046	ENSPLAP00000004797	UBIQUITIN_CONJUGAT_2 domain-containing protein.	GABA type A receptor associated protein like 2.	0.949
ENSPLAP00000000046	LOC106949458	ENSPLAP00000000046	ENSPLAP00000016551	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	0.962
ENSPLAP00000000046	LOC106952860	ENSPLAP00000000046	ENSPLAP00000004148	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 variant 1.	0.990
ENSPLAP00000000046	casp9	ENSPLAP00000000046	ENSPLAP00000005968	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.	0.967
ENSPLAP00000000046	map1lc3a	ENSPLAP00000000046	ENSPLAP00000018253	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Microtubule-associated protein 1 light chain 3 alpha.	0.968
ENSPLAP00000000046	map1lc3b	ENSPLAP00000000046	ENSPLAP00000012225	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Microtubule-associated protein 1 light chain 3 beta.	0.968
ENSPLAP00000000046	rnf41	ENSPLAP00000000046	ENSPLAP00000018859	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ring finger protein 41.	0.980
ENSPLAP00000000046	rps27a	ENSPLAP00000000046	ENSPLAP00000025723	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ribosomal protein S27a.	0.978
ENSPLAP00000000046	uba1	ENSPLAP00000000046	ENSPLAP00000010960	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.	0.962
ENSPLAP00000000046	uba6	ENSPLAP00000000046	ENSPLAP00000018201	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin like modifier activating enzyme 6.	0.962
LOC106949313	ENSPLAP00000000046	ENSPLAP00000004797	ENSPLAP00000000046	GABA type A receptor associated protein like 2.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.949
LOC106949313	LOC106949458	ENSPLAP00000004797	ENSPLAP00000016551	GABA type A receptor associated protein like 2.	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	0.530
LOC106949313	map1lc3a	ENSPLAP00000004797	ENSPLAP00000018253	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 alpha.	0.792
LOC106949313	map1lc3b	ENSPLAP00000004797	ENSPLAP00000012225	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 beta.	0.792
LOC106949313	uba1	ENSPLAP00000004797	ENSPLAP00000010960	GABA type A receptor associated protein like 2.	Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.	0.530
LOC106949313	uba6	ENSPLAP00000004797	ENSPLAP00000018201	GABA type A receptor associated protein like 2.	Ubiquitin like modifier activating enzyme 6.	0.530
LOC106949458	ENSPLAP00000000046	ENSPLAP00000016551	ENSPLAP00000000046	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.962
LOC106949458	LOC106949313	ENSPLAP00000016551	ENSPLAP00000004797	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	GABA type A receptor associated protein like 2.	0.530
LOC106949458	LOC106952860	ENSPLAP00000016551	ENSPLAP00000004148	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	Ubiquitin-conjugating enzyme E2 variant 1.	0.830
LOC106949458	map1lc3a	ENSPLAP00000016551	ENSPLAP00000018253	Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.	Microtubule-associated protein 1 light chain 3 alpha.	0.526