Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106958528Uncharacterized protein. (273 aa)    
Predicted Functional Partners:
cog7
Component of oligomeric golgi complex 7.
    
 
 0.542
med4
Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
     
 0.434
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 
 0.425
vapb
MSP domain-containing protein.
    
 
 0.425
LOC106960241
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.425
st13
ST13 Hsp70 interacting protein.
      
 0.413
ublcp1
Ubiquitin-like domain containing CTD phosphatase 1.
    
 0.412
LOC106954136
Intersectin 2b.
     
 0.410
ENSPLAP00000017806
Uncharacterized protein.
     
 0.410
ENSPLAP00000030866
Uncharacterized protein.
     
 0.410
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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