Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCDH8Protocadherin 8. (1023 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
     
 0.605
egfl6
EGF-like-domain, multiple 6.
    
 0.593
anks3
Ankyrin repeat and sterile alpha motif domain containing 3.
    
 0.570
rhot2
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
     
 0.565
cog3
Component of oligomeric golgi complex 3.
      
 0.556
ENSPLAP00000015093
Rhomboid, veinlet-like 1 (Drosophila).
      
 0.550
wdr24
WD repeat domain 24.
      
 0.545
ARHGAP6-2
Rho GTPase activating protein 6.
      
 0.532
LOC106934894
G_PROTEIN_RECEP_F3_4 domain-containing protein.
      
 0.524
grm4
Glutamate receptor, metabotropic 4.
      
 0.524
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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