STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH8Protocadherin 8. (1023 aa)    
Predicted Functional Partners:
egfl6
EGF-like-domain, multiple 6.
   
 0.628
anks3
Ankyrin repeat and sterile alpha motif domain containing 3.
    
 0.617
rhot2
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.608
ENSPLAP00000015093
Rhomboid, veinlet-like 1 (Drosophila).
      
 0.590
wdr24
WD repeat domain 24.
      
 0.590
cog3
Component of oligomeric golgi complex 3.
      
 0.590
LOC106946601
Glucagon receptor a; Belongs to the G-protein coupled receptor 2 family.
    
 0.571
fjx1
Four-jointed box kinase 1.
   
  0.566
ARHGAP6-2
Rho GTPase activating protein 6.
      
 0.523
fat1
FAT atypical cadherin 1a.
    
 
0.519
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.