ENSPLAP00000000099 protein (Poecilia latipinna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPLAP00000000099

Endostatin domain-containing protein. (244 aa)

Predicted Functional Partners:

COL8A1

0.475

ENSPLAP00000017769

0.436

LOC106951145

0.436

col6a1

0.428

LOC106964138

0.426

itgb1

0.426

LOC106949493

0.426

itgb3

0.425

itgb5

0.425

LOC106950752

0.425

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COL8A1	ENSPLAP00000000099	ENSPLAP00000016620	ENSPLAP00000000099	Collagen, type VIII, alpha 1b.	Endostatin domain-containing protein.	0.475
COL8A1	ENSPLAP00000017769	ENSPLAP00000016620	ENSPLAP00000017769	Collagen, type VIII, alpha 1b.	Integrin, alpha 3b; Belongs to the integrin alpha chain family.	0.406
COL8A1	LOC106949493	ENSPLAP00000016620	ENSPLAP00000029546	Collagen, type VIII, alpha 1b.	Integrin beta.	0.431
COL8A1	LOC106950752	ENSPLAP00000016620	ENSPLAP00000017752	Collagen, type VIII, alpha 1b.	Integrin beta; Belongs to the integrin beta chain family.	0.434
COL8A1	LOC106951145	ENSPLAP00000016620	ENSPLAP00000020351	Collagen, type VIII, alpha 1b.	Uncharacterized protein; Belongs to the integrin alpha chain family.	0.406
COL8A1	LOC106964138	ENSPLAP00000016620	ENSPLAP00000018124	Collagen, type VIII, alpha 1b.	Integrin beta; Belongs to the integrin beta chain family.	0.431
COL8A1	col6a1	ENSPLAP00000016620	ENSPLAP00000030184	Collagen, type VIII, alpha 1b.	Collagen, type VI, alpha 1.	0.528
COL8A1	itgb1	ENSPLAP00000016620	ENSPLAP00000024106	Collagen, type VIII, alpha 1b.	Integrin beta; Belongs to the integrin beta chain family.	0.433
COL8A1	itgb3	ENSPLAP00000016620	ENSPLAP00000008746	Collagen, type VIII, alpha 1b.	Integrin beta; Belongs to the integrin beta chain family.	0.434
COL8A1	itgb5	ENSPLAP00000016620	ENSPLAP00000012165	Collagen, type VIII, alpha 1b.	Integrin beta; Belongs to the integrin beta chain family.	0.434
ENSPLAP00000000099	COL8A1	ENSPLAP00000000099	ENSPLAP00000016620	Endostatin domain-containing protein.	Collagen, type VIII, alpha 1b.	0.475
ENSPLAP00000000099	ENSPLAP00000017769	ENSPLAP00000000099	ENSPLAP00000017769	Endostatin domain-containing protein.	Integrin, alpha 3b; Belongs to the integrin alpha chain family.	0.436
ENSPLAP00000000099	LOC106949493	ENSPLAP00000000099	ENSPLAP00000029546	Endostatin domain-containing protein.	Integrin beta.	0.426
ENSPLAP00000000099	LOC106950752	ENSPLAP00000000099	ENSPLAP00000017752	Endostatin domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.425
ENSPLAP00000000099	LOC106951145	ENSPLAP00000000099	ENSPLAP00000020351	Endostatin domain-containing protein.	Uncharacterized protein; Belongs to the integrin alpha chain family.	0.436
ENSPLAP00000000099	LOC106964138	ENSPLAP00000000099	ENSPLAP00000018124	Endostatin domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.426
ENSPLAP00000000099	col6a1	ENSPLAP00000000099	ENSPLAP00000030184	Endostatin domain-containing protein.	Collagen, type VI, alpha 1.	0.428
ENSPLAP00000000099	itgb1	ENSPLAP00000000099	ENSPLAP00000024106	Endostatin domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.426
ENSPLAP00000000099	itgb3	ENSPLAP00000000099	ENSPLAP00000008746	Endostatin domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.425
ENSPLAP00000000099	itgb5	ENSPLAP00000000099	ENSPLAP00000012165	Endostatin domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.425