vapa protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

vapa

VAMP (vesicle-associated membrane protein)-associated protein A, like. (247 aa)

Predicted Functional Partners:

stard3

0.962

stard3nl

0.829

bcap31

0.827

bcap29

0.827

LOC106953903

0.759

stard5

0.759

star

0.759

ENSPLAP00000000197

0.735

LOC106959535

0.735

LOC106938287

0.735

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000000197	vapa	ENSPLAP00000000197	ENSPLAP00000000542	Oxysterol-binding protein; Belongs to the OSBP family.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.735
LOC106938287	vapa	ENSPLAP00000015664	ENSPLAP00000000542	Oxysterol-binding protein; Belongs to the OSBP family.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.735
LOC106953903	stard3	ENSPLAP00000019131	ENSPLAP00000030753	START domain-containing protein.	StAR-related lipid transfer (START) domain containing 3.	0.798
LOC106953903	stard3nl	ENSPLAP00000019131	ENSPLAP00000006949	START domain-containing protein.	STARD3 N-terminal like.	0.769
LOC106953903	stard5	ENSPLAP00000019131	ENSPLAP00000022242	START domain-containing protein.	StAR-related lipid transfer (START) domain containing 5.	0.487
LOC106953903	vapa	ENSPLAP00000019131	ENSPLAP00000000542	START domain-containing protein.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.759
LOC106959535	vapa	ENSPLAP00000013441	ENSPLAP00000000542	Oxysterol-binding protein; Belongs to the OSBP family.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.735
bcap29	vapa	ENSPLAP00000030371	ENSPLAP00000000542	Uncharacterized protein.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.827
bcap31	vapa	ENSPLAP00000028554	ENSPLAP00000000542	B cell receptor associated protein 31.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.827
star	stard3	ENSPLAP00000022664	ENSPLAP00000030753	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	StAR-related lipid transfer (START) domain containing 3.	0.833
star	stard3nl	ENSPLAP00000022664	ENSPLAP00000006949	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	STARD3 N-terminal like.	0.826
star	stard5	ENSPLAP00000022664	ENSPLAP00000022242	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	StAR-related lipid transfer (START) domain containing 5.	0.549
star	vapa	ENSPLAP00000022664	ENSPLAP00000000542	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.759
stard3	LOC106953903	ENSPLAP00000030753	ENSPLAP00000019131	StAR-related lipid transfer (START) domain containing 3.	START domain-containing protein.	0.798
stard3	star	ENSPLAP00000030753	ENSPLAP00000022664	StAR-related lipid transfer (START) domain containing 3.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.833
stard3	stard3nl	ENSPLAP00000030753	ENSPLAP00000006949	StAR-related lipid transfer (START) domain containing 3.	STARD3 N-terminal like.	0.827
stard3	stard5	ENSPLAP00000030753	ENSPLAP00000022242	StAR-related lipid transfer (START) domain containing 3.	StAR-related lipid transfer (START) domain containing 5.	0.550
stard3	vapa	ENSPLAP00000030753	ENSPLAP00000000542	StAR-related lipid transfer (START) domain containing 3.	VAMP (vesicle-associated membrane protein)-associated protein A, like.	0.962
stard3nl	LOC106953903	ENSPLAP00000006949	ENSPLAP00000019131	STARD3 N-terminal like.	START domain-containing protein.	0.769
stard3nl	star	ENSPLAP00000006949	ENSPLAP00000022664	STARD3 N-terminal like.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.826