herpud2 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

herpud2

Ubiquitin-like domain-containing protein. (377 aa)

Predicted Functional Partners:

syvn1

0.544

amfr

0.539

LOC106936789

0.477

LOC106964606

0.427

ENSPLAP00000017996

0.406

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPLAP00000017996	herpud2	ENSPLAP00000017996	ENSPLAP00000000740	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.406
LOC106936789	LOC106964606	ENSPLAP00000002219	ENSPLAP00000022334	Activating transcription factor 4a.	Activating transcription factor 4b.	0.928
LOC106936789	herpud2	ENSPLAP00000002219	ENSPLAP00000000740	Activating transcription factor 4a.	Ubiquitin-like domain-containing protein.	0.477
LOC106964606	LOC106936789	ENSPLAP00000022334	ENSPLAP00000002219	Activating transcription factor 4b.	Activating transcription factor 4a.	0.928
LOC106964606	herpud2	ENSPLAP00000022334	ENSPLAP00000000740	Activating transcription factor 4b.	Ubiquitin-like domain-containing protein.	0.427
amfr	herpud2	ENSPLAP00000027501	ENSPLAP00000000740	Autocrine motility factor receptor b.	Ubiquitin-like domain-containing protein.	0.539
herpud2	ENSPLAP00000017996	ENSPLAP00000000740	ENSPLAP00000017996	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.406
herpud2	LOC106936789	ENSPLAP00000000740	ENSPLAP00000002219	Ubiquitin-like domain-containing protein.	Activating transcription factor 4a.	0.477
herpud2	LOC106964606	ENSPLAP00000000740	ENSPLAP00000022334	Ubiquitin-like domain-containing protein.	Activating transcription factor 4b.	0.427
herpud2	amfr	ENSPLAP00000000740	ENSPLAP00000027501	Ubiquitin-like domain-containing protein.	Autocrine motility factor receptor b.	0.539
herpud2	syvn1	ENSPLAP00000000740	ENSPLAP00000021254	Ubiquitin-like domain-containing protein.	Synovial apoptosis inhibitor 1, synoviolin.	0.544
syvn1	herpud2	ENSPLAP00000021254	ENSPLAP00000000740	Synovial apoptosis inhibitor 1, synoviolin.	Ubiquitin-like domain-containing protein.	0.544