STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
supt3hUncharacterized protein. (361 aa)    
Predicted Functional Partners:
ENSPLAP00000005771
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.997
sgf29
SAGA complex associated factor 29.
    
 0.997
taf10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.997
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.997
LOC106938866
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.997
supt20h
SPT20 homolog, SAGA complex component.
    
 0.995
TADA1
Transcriptional adaptor 1.
    
 
 0.993
tada2a
Transcriptional adapter.
    
 0.992
supt7l
SPT7 like, STAGA complex gamma subunit.
    
 0.984
eny2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.984
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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