Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106964102TIMP metallopeptidase inhibitor 2a. (221 aa)    
Predicted Functional Partners:
LOC106934757
Matrix metallopeptidase 14b (membrane-inserted).
    
 0.967
mmp15
Matrix metallopeptidase 15b.
    
 0.959
mmp2
Matrix metallopeptidase 2.
   
 0.882
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 
 0.856
LOC106951598
ZnMc domain-containing protein.
   
 0.744
ENSPLAP00000011727
ZnMc domain-containing protein.
   
 0.744
ENSPLAP00000012039
ZnMc domain-containing protein.
   
 0.744
col6a1
Collagen, type VI, alpha 1.
   
 
 0.742
LOC106958659
ZnMc domain-containing protein.
    
 0.730
LOC106935241
Matrix metallopeptidase 13b.
   
 0.724
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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