Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106954289Matrix-remodelling associated 8b. (426 aa)    
Predicted Functional Partners:
LOC106950080
Uncharacterized protein.
  
  
 
0.903
phb
Prohibitin.
      
 0.712
ENSPLAP00000030248
Low density lipoprotein receptor class A domain containing 3.
      
 0.710
ints11
Integrator complex subunit 11.
      
 0.655
meak7
MTOR associated protein, eak-7 homolog.
      
 0.633
fam20c
FAM20C golgi associated secretory pathway kinase a.
     
  0.616
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.563
pusl1
tRNA pseudouridine synthase.
      
 0.535
LOC106960266
Fam20C domain-containing protein.
     
  0.525
LOC106936679
Fam20C domain-containing protein.
     
  0.525
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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