Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TIMP3TIMP metallopeptidase inhibitor 3. (214 aa)    
Predicted Functional Partners:
adam17
ADAM metallopeptidase domain 17b.
    
 
 0.915
LOC106954181
ADAM metallopeptidase domain 17a.
    
 
 0.915
LOC106964102
TIMP metallopeptidase inhibitor 2a.
   
 
 0.856
LOC106936699
TIMP metallopeptidase inhibitor 2b.
   
 
 0.856
mmp15
Matrix metallopeptidase 15b.
   
 0.805
LOC106934757
Matrix metallopeptidase 14b (membrane-inserted).
   
 0.805
mmp24
Matrix metallopeptidase 24.
    
 0.781
LOC106956188
Matrix metallopeptidase 11.
    
 0.764
LOC106955957
Matrix metallopeptidase 11a.
    
 0.764
col6a1
Collagen, type VI, alpha 1.
   
 
 0.734
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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