STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpatch1G patch domain containing 1. (616 aa)    
Predicted Functional Partners:
ENSPLAP00000014291
DUF1604 domain-containing protein.
 
     0.914
wdr83
WD repeat domain containing 83.
    
 
 0.900
ccdc12
Coiled-coil domain containing 12.
    
 0.893
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.874
yju2
YJU2 splicing factor homolog.
    
  0.852
shd
Src homology 2 domain containing transforming protein D, a.
    
  0.821
plrg1
Pleiotropic regulator 1.
    
 
 0.802
sde2
SDE2 telomere maintenance homolog (S. pombe).
    
  0.783
mtrex
Mtr4 exosome RNA helicase.
   
 0.779
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  0.772
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.