LOC106938127 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106938127

Apobec1 complementation factor. (606 aa)

Predicted Functional Partners:

apobec2

0.777

LOC106954507

0.746

hnrnpk

0.746

eprs1

0.743

EPRS1

0.743

psmg2

0.719

LOC106953185

0.701

LOC106965063

0.701

ewsr1

0.699

LOC106937209

0.697

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPRS1	LOC106938127	ENSPLAP00000027534	ENSPLAP00000001059	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	Apobec1 complementation factor.	0.743
EPRS1	LOC106953185	ENSPLAP00000027534	ENSPLAP00000002431	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	RRM domain-containing protein.	0.454
EPRS1	LOC106965063	ENSPLAP00000027534	ENSPLAP00000027039	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	RRM domain-containing protein.	0.454
EPRS1	eprs1	ENSPLAP00000027534	ENSPLAP00000018447	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.999
LOC106937209	LOC106938127	ENSPLAP00000007277	ENSPLAP00000001059	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Apobec1 complementation factor.	0.697
LOC106937209	LOC106953185	ENSPLAP00000007277	ENSPLAP00000002431	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	RRM domain-containing protein.	0.816
LOC106937209	LOC106954507	ENSPLAP00000007277	ENSPLAP00000021081	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Heterogeneous nuclear ribonucleoprotein K, like.	0.919
LOC106937209	LOC106965063	ENSPLAP00000007277	ENSPLAP00000027039	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	RRM domain-containing protein.	0.816
LOC106937209	ewsr1	ENSPLAP00000007277	ENSPLAP00000001973	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	EWS RNA-binding protein 1b.	0.975
LOC106937209	hnrnpk	ENSPLAP00000007277	ENSPLAP00000031234	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Heterogeneous nuclear ribonucleoprotein K.	0.919
LOC106938127	EPRS1	ENSPLAP00000001059	ENSPLAP00000027534	Apobec1 complementation factor.	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.743
LOC106938127	LOC106937209	ENSPLAP00000001059	ENSPLAP00000007277	Apobec1 complementation factor.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.697
LOC106938127	LOC106953185	ENSPLAP00000001059	ENSPLAP00000002431	Apobec1 complementation factor.	RRM domain-containing protein.	0.701
LOC106938127	LOC106954507	ENSPLAP00000001059	ENSPLAP00000021081	Apobec1 complementation factor.	Heterogeneous nuclear ribonucleoprotein K, like.	0.746
LOC106938127	LOC106965063	ENSPLAP00000001059	ENSPLAP00000027039	Apobec1 complementation factor.	RRM domain-containing protein.	0.701
LOC106938127	apobec2	ENSPLAP00000001059	ENSPLAP00000019718	Apobec1 complementation factor.	Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2b.	0.777
LOC106938127	eprs1	ENSPLAP00000001059	ENSPLAP00000018447	Apobec1 complementation factor.	Uncharacterized protein.	0.743
LOC106938127	ewsr1	ENSPLAP00000001059	ENSPLAP00000001973	Apobec1 complementation factor.	EWS RNA-binding protein 1b.	0.699
LOC106938127	hnrnpk	ENSPLAP00000001059	ENSPLAP00000031234	Apobec1 complementation factor.	Heterogeneous nuclear ribonucleoprotein K.	0.746
LOC106938127	psmg2	ENSPLAP00000001059	ENSPLAP00000020207	Apobec1 complementation factor.	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	0.719