scarf2 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

scarf2

Uncharacterized protein. (939 aa)

Predicted Functional Partners:

slc7a4

0.754

dgcr2

0.688

klhl22

0.659

LOC106934409

0.566

LOC106958044

0.547

slc25a1

0.547

gins2

0.542

pi4ka

0.518

LOC106947454

0.518

snap29

0.517

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106934409	klhl22	ENSPLAP00000023149	ENSPLAP00000025852	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Kelch-like family member 22.	0.412
LOC106934409	scarf2	ENSPLAP00000023149	ENSPLAP00000001083	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Uncharacterized protein.	0.566
LOC106934409	slc7a4	ENSPLAP00000023149	ENSPLAP00000013767	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Solute carrier family 7 member 4.	0.515
LOC106947454	pi4ka	ENSPLAP00000030436	ENSPLAP00000026777	Phosphatidylinositol 4-kinase, catalytic, alpha a; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 4-kinase, catalytic, alpha b; Belongs to the PI3/PI4-kinase family.	0.901
LOC106947454	scarf2	ENSPLAP00000030436	ENSPLAP00000001083	Phosphatidylinositol 4-kinase, catalytic, alpha a; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.518
LOC106947454	slc7a4	ENSPLAP00000030436	ENSPLAP00000013767	Phosphatidylinositol 4-kinase, catalytic, alpha a; Belongs to the PI3/PI4-kinase family.	Solute carrier family 7 member 4.	0.544
LOC106947454	snap29	ENSPLAP00000030436	ENSPLAP00000026847	Phosphatidylinositol 4-kinase, catalytic, alpha a; Belongs to the PI3/PI4-kinase family.	Synaptosome associated protein 29.	0.657
LOC106958044	dgcr2	ENSPLAP00000011822	ENSPLAP00000031428	Si:dkey-178e17.1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	DiGeorge syndrome critical region gene 2.	0.539
LOC106958044	scarf2	ENSPLAP00000011822	ENSPLAP00000001083	Si:dkey-178e17.1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.547
LOC106958044	snap29	ENSPLAP00000011822	ENSPLAP00000026847	Si:dkey-178e17.1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Synaptosome associated protein 29.	0.519
dgcr2	LOC106958044	ENSPLAP00000031428	ENSPLAP00000011822	DiGeorge syndrome critical region gene 2.	Si:dkey-178e17.1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.539
dgcr2	scarf2	ENSPLAP00000031428	ENSPLAP00000001083	DiGeorge syndrome critical region gene 2.	Uncharacterized protein.	0.688
dgcr2	slc25a1	ENSPLAP00000031428	ENSPLAP00000030500	DiGeorge syndrome critical region gene 2.	Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.539
gins2	scarf2	ENSPLAP00000001061	ENSPLAP00000001083	DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.	Uncharacterized protein.	0.542
klhl22	LOC106934409	ENSPLAP00000025852	ENSPLAP00000023149	Kelch-like family member 22.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.412
klhl22	scarf2	ENSPLAP00000025852	ENSPLAP00000001083	Kelch-like family member 22.	Uncharacterized protein.	0.659
klhl22	slc7a4	ENSPLAP00000025852	ENSPLAP00000013767	Kelch-like family member 22.	Solute carrier family 7 member 4.	0.574
klhl22	snap29	ENSPLAP00000025852	ENSPLAP00000026847	Kelch-like family member 22.	Synaptosome associated protein 29.	0.527
pi4ka	LOC106947454	ENSPLAP00000026777	ENSPLAP00000030436	Phosphatidylinositol 4-kinase, catalytic, alpha b; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 4-kinase, catalytic, alpha a; Belongs to the PI3/PI4-kinase family.	0.901
pi4ka	scarf2	ENSPLAP00000026777	ENSPLAP00000001083	Phosphatidylinositol 4-kinase, catalytic, alpha b; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.518