rbm47 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rbm47

RNA binding motif protein 47. (610 aa)

Predicted Functional Partners:

apobec2

0.830

dazap1

0.787

LOC106954507

0.773

hnrnpk

0.773

eprs1

0.743

EPRS1

0.743

hnrnpm

0.705

LOC106953185

0.701

LOC106965063

0.701

ewsr1

0.697

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPRS1	LOC106953185	ENSPLAP00000027534	ENSPLAP00000002431	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	RRM domain-containing protein.	0.454
EPRS1	LOC106965063	ENSPLAP00000027534	ENSPLAP00000027039	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	RRM domain-containing protein.	0.454
EPRS1	eprs1	ENSPLAP00000027534	ENSPLAP00000018447	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	Uncharacterized protein.	0.999
EPRS1	rbm47	ENSPLAP00000027534	ENSPLAP00000001097	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	RNA binding motif protein 47.	0.743
LOC106953185	EPRS1	ENSPLAP00000002431	ENSPLAP00000027534	RRM domain-containing protein.	Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.454
LOC106953185	LOC106954507	ENSPLAP00000002431	ENSPLAP00000021081	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K, like.	0.995
LOC106953185	LOC106965063	ENSPLAP00000002431	ENSPLAP00000027039	RRM domain-containing protein.	RRM domain-containing protein.	0.901
LOC106953185	dazap1	ENSPLAP00000002431	ENSPLAP00000023166	RRM domain-containing protein.	DAZ associated protein 1.	0.424
LOC106953185	eprs1	ENSPLAP00000002431	ENSPLAP00000018447	RRM domain-containing protein.	Uncharacterized protein.	0.454
LOC106953185	ewsr1	ENSPLAP00000002431	ENSPLAP00000001973	RRM domain-containing protein.	EWS RNA-binding protein 1b.	0.732
LOC106953185	hnrnpk	ENSPLAP00000002431	ENSPLAP00000031234	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K.	0.995
LOC106953185	hnrnpm	ENSPLAP00000002431	ENSPLAP00000008475	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein M.	0.996
LOC106953185	rbm47	ENSPLAP00000002431	ENSPLAP00000001097	RRM domain-containing protein.	RNA binding motif protein 47.	0.701
LOC106954507	LOC106953185	ENSPLAP00000021081	ENSPLAP00000002431	Heterogeneous nuclear ribonucleoprotein K, like.	RRM domain-containing protein.	0.995
LOC106954507	LOC106965063	ENSPLAP00000021081	ENSPLAP00000027039	Heterogeneous nuclear ribonucleoprotein K, like.	RRM domain-containing protein.	0.995
LOC106954507	dazap1	ENSPLAP00000021081	ENSPLAP00000023166	Heterogeneous nuclear ribonucleoprotein K, like.	DAZ associated protein 1.	0.611
LOC106954507	ewsr1	ENSPLAP00000021081	ENSPLAP00000001973	Heterogeneous nuclear ribonucleoprotein K, like.	EWS RNA-binding protein 1b.	0.859
LOC106954507	hnrnpk	ENSPLAP00000021081	ENSPLAP00000031234	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein K.	0.901
LOC106954507	hnrnpm	ENSPLAP00000021081	ENSPLAP00000008475	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein M.	0.998
LOC106954507	rbm47	ENSPLAP00000021081	ENSPLAP00000001097	Heterogeneous nuclear ribonucleoprotein K, like.	RNA binding motif protein 47.	0.773