Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC106947364Si:ch211-113e8.10. (765 aa)    
Predicted Functional Partners:
crbn
Cereblon.
    
 
 0.983
zc3h13
Zinc finger CCCH-type containing 13.
    
   0.765
LOC106955714
Selenophosphate synthetase 2.
    
   0.764
sephs1
Selenophosphate synthetase 1.
    
   0.764
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
   0.737
pycard
Uncharacterized protein.
    
  0.730
ENSPLAP00000026153
CARD domain-containing protein.
    
  0.730
ddb1
Damage-specific DNA binding protein 1.
    
 0.725
rnf166
Ring finger protein 166.
    
 0.720
ubr7
Ubiquitin protein ligase E3 component n-recognin 7.
      
 0.716
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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