Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC106940466RF_PROK_I domain-containing protein. (215 aa)    
Predicted Functional Partners:
hemk1
HemK methyltransferase family member 1.
  
 
 0.916
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
  
 
 0.871
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
 
 0.825
MRPL58
Mitochondrial ribosomal protein L58.
  
 0.807
mrrf
Mitochondrial ribosome recycling factor.
  
 
 0.779
mrpl13
Mitochondrial ribosomal protein L13.
 
 0.761
mrps7
Mitochondrial ribosomal protein S7.
 
 0.760
mrps31
Mitochondrial ribosomal protein S31.
   
 0.746
gfm2
Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
 
 
 0.730
pum2
Pumilio RNA-binding family member 2.
    
   0.713
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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