Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zgpatZinc finger, CCCH-type with G patch domain. (523 aa)    
Predicted Functional Partners:
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
    
   0.967
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
   0.954
DHX15
DEAH-box helicase 15.
    
 
 0.925
LOC106946581
DEAH (Asp-Glu-Ala-His) box helicase 15.
    
 
 0.825
kiaa1328
Zgc:162344.
    
   0.818
lsm5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
   0.809
LOC106950461
HTH myb-type domain-containing protein.
    
 
 0.806
prpf8
Pre-mRNA processing factor 8.
    
   0.770
lsm3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
   0.742
ENSPLAP00000011100
Small nuclear ribonucleoprotein-associated protein.
    
   0.736
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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