STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106942091Ceramide transporter 1b. (564 aa)    
Predicted Functional Partners:
LOC106953035
Casein kinase 1 gamma 2; Belongs to the protein kinase superfamily.
    
 0.731
LOC106936641
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.731
LOC106960637
Casein kinase 1, gamma 1; Belongs to the protein kinase superfamily.
    
 0.731
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 0.559
LOC106960241
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 0.559
vapb
MSP domain-containing protein.
    
 0.546
mospd1
Motile sperm domain containing 1.
    
 0.511
LOC106935927
Ran GTPase activating protein 1b.
    
   0.508
rangap1
RAN GTPase activating protein 1a.
    
   0.508
star
Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.
      
 0.418
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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