STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106940460RRM domain-containing protein. (469 aa)    
Predicted Functional Partners:
dazl
Deleted in azoospermia-like.
   
 0.942
nanos3
Nanos homolog 3; Belongs to the nanos family.
    
 
 0.922
trap1
TNF receptor-associated protein 1.
    
   0.852
piwil1
Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family.
      
 0.818
ddx4
DEAD (Asp-Glu-Ala-Asp) box polypeptide 4; Belongs to the DEAD box helicase family.
    
 0.766
LOC106954507
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.744
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.744
eprs1
Uncharacterized protein.
   
 
 0.743
EPRS1
Glutamyl-prolyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.743
NANOS2
Nanos C2HC-type zinc finger 2; Belongs to the nanos family.
    
 
 0.739
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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