Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
LOC106938117Si:ch1073-174d20.2. (761 aa)    
Predicted Functional Partners:
phb
Prohibitin.
  
 0.940
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
    
 
 0.877
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
    
 
 0.874
LOC106938668
Prohibitin.
  
 0.869
phb2
Prohibitin.
  
 0.869
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
 
 
 0.867
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.851
LOC106943554
Peptidase_M48 domain-containing protein.
  
 0.844
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.841
pmpca
Peptidase (mitochondrial processing) alpha.
  
 0.836
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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