STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106954164Uncharacterized protein. (267 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.915
LOC106954116
Uncharacterized protein.
  
  
 
0.898
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.836
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.709
fbxo4
F-box protein 4.
     
 0.689
LOC106955166
Zgc:175088.
  
  
 
0.687
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
     
 0.681
cops5
COP9 signalosome subunit 5.
    
  0.640
ENSPLAP00000029821
F-box protein 16.
    
 0.616
LOC106937213
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.587
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.