Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106954164Uncharacterized protein. (267 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.894
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.885
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.871
cops2
COP9 signalosome subunit 2.
    
  0.711
cops3
COP9 signalosome subunit 3.
    
  0.702
cops7a
COP9 constitutive photomorphogenic homolog subunit 7A.
    
  0.688
cops5
COP9 signalosome subunit 5.
    
  0.665
LOC106942419
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
  0.654
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
  0.654
COPS6
COP9 signalosome subunit 6.
    
  0.617
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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