STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dennd5aDENN/MADD domain containing 5A. (1295 aa)    
Predicted Functional Partners:
rab41
RAB41, member RAS oncogene family.
    
 
 0.638
LOC106960187
RAB6B, member RAS oncogene family.
    
 
 0.638
rab6b
RAB6B, member RAS oncogene family a.
    
 
 0.638
rab6a
RAB6A, member RAS oncogene family.
    
 
 0.638
ENSPLAP00000019989
Uncharacterized protein.
     
 0.630
rab28
Uncharacterized protein.
     
 0.605
itfg1
Integrin alpha FG-GAP repeat containing 1.
      
 0.541
ENSPLAP00000007354
AVL9 homolog (S. cerevisiase).
      
 0.534
LOC106940507
RAB34, member RAS oncogene family a.
    
 
 0.491
rab34
RAB34, member RAS oncogene family b.
    
 
 0.491
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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