STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdac9Histone deacetylase 9b. (632 aa)    
Predicted Functional Partners:
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.910
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.910
LOC106961857
H2A histone family, member Y; Belongs to the histone H2A family.
   
 0.830
ranbp2
RAN binding protein 2.
  
 0.788
sin3a
SIN3 transcription regulator family member Aa.
    
 0.769
LOC106952614
SIN3 transcription regulator family member Ab.
    
 0.769
sin3b
SIN3 transcription regulator family member B.
    
 0.769
LOC106952289
Retinoblastoma binding protein 4.
   
 0.758
rps27a
Ribosomal protein S27a.
    
 0.746
wdr73
WD repeat domain 73.
   
 0.736
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.