Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hdac9Histone deacetylase 9b. (632 aa)    
Predicted Functional Partners:
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.864
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.864
ENSPLAP00000014192
NDK domain-containing protein.
   
 
 0.818
wdr90
WD repeat domain 90.
    
 0.802
ranbp2
RAN binding protein 2.
  
 0.779
ENSPLAP00000013662
E1A binding protein p300 b.
    
 0.753
LOC106938937
Hist_deacetyl domain-containing protein.
 
      0.729
sirt1
Sirtuin 1.
   
 0.726
LOC106961962
DUF4201 domain-containing protein.
   
 
 0.718
sin3a
SIN3 transcription regulator family member Aa.
    
 0.700
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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