STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106964823Zgc:171501. (554 aa)    
Predicted Functional Partners:
tyms
Thymidylate synthetase.
    
  0.653
tk1
Thymidine kinase.
    
  0.638
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
  0.631
LOC106952227
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.595
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.589
gapdhs
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.589
ENSPLAP00000014192
NDK domain-containing protein.
    
  0.535
LOC106964757
Nucleoside diphosphate kinase.
    
  0.519
LOC106934529
NDK domain-containing protein; Belongs to the NDK family.
    
  0.519
LOC106951632
Nucleoside diphosphate kinase.
    
  0.519
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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