STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capn10Calpain 10; Belongs to the peptidase C2 family. (662 aa)    
Predicted Functional Partners:
cast
Calpastatin.
    
 0.814
CAPNS1
Calpain small subunit 1.
    
 0.686
capns1
Calpain, small subunit 1 b.
    
 0.686
agt
Angiotensinogen; Belongs to the serpin family.
      
 0.555
rnpepl1
Arginyl aminopeptidase like 1.
      
 0.546
capn15
Calpain 15; Belongs to the peptidase C2 family.
    
 0.486
pef1
Penta-EF-hand domain containing 1.
    
  0.468
sri
Uncharacterized protein.
    
  0.468
LOC106964183
Grancalcin.
    
  0.468
pdcd6
Programmed cell death 6.
    
  0.468
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.