Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prr18Proline rich 18. (250 aa)    
Predicted Functional Partners:
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
   0.713
fam43b
Family with sequence similarity 43 member B.
   
  
 0.691
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 
 0.680
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 
 0.622
LOC106958270
Crystallin, beta B1; Belongs to the beta/gamma-crystallin family.
    
 
 0.608
LOC106946094
Golgi transport 1Bb.
    
 
 0.588
LOC106942116
Golgi transport 1Ba.
    
 
 0.588
LOC106939186
Syntaxin 16; Belongs to the syntaxin family.
    
   0.527
stx16
Syntaxin 16.
    
   0.527
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
   0.521
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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