STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp25Small nuclear ribonucleoprotein 25. (179 aa)    
Predicted Functional Partners:
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
    
 0.908
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
     
 0.845
pdcd7
Uncharacterized protein.
     
 0.761
ENSPLAP00000000084
Small nuclear ribonucleoprotein polypeptide F.
   
 0.748
ENSPLAP00000025517
Si:zfos-375h5.1.
     
 0.706
LOC106958723
Serine/arginine repetitive matrix 2.
     
 0.706
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
     
 0.699
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.695
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.690
srsf5
Serine and arginine rich splicing factor 5a.
    
 0.681
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.