Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snrnp25Small nuclear ribonucleoprotein 25. (179 aa)    
Predicted Functional Partners:
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
    
 0.998
pdcd7
Uncharacterized protein.
    
 0.997
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
    
 0.996
zmat5
Zinc finger, matrin-type 5.
   
 0.982
ENSPLAP00000000084
Small nuclear ribonucleoprotein polypeptide F.
   
 0.973
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.951
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
  0.942
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
     
 0.931
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.920
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
     
 0.915
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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