Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rabepkRab9 effector protein with kelch motifs. (350 aa)    
Predicted Functional Partners:
VAMP3
Vesicle associated membrane protein 3.
     
 0.974
LOC106960967
Protein phosphatase 2, regulatory subunit A, beta b.
   
 
 0.823
pum2
Pumilio RNA-binding family member 2.
   
   0.787
pum1
Pumilio RNA-binding family member 1.
   
   0.787
stx8
Syntaxin 8.
     
 0.765
eloc
Elongin C paralog a; Belongs to the SKP1 family.
   
  0.753
ENSPLAP00000012142
Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.749
ENSPLAP00000027079
Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.749
ttc8
Tetratricopeptide repeat domain 8.
      
 0.721
mmaa
Metabolism of cobalamin associated A.
      
 0.720
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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