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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106959932Mab-21-like 1. (359 aa)    
Predicted Functional Partners:
LOC106946224
Thyroid hormone responsive.
    
  0.694
sting1
Transmembrane protein 173.
    
 0.620
LOC106943981
Saposin A-type domain-containing protein.
    
  0.582
LOC106942187
IFI30 lysosomal thiol reductase.
    
  0.582
LOC106943986
Si:dkey-197i20.6.
    
  0.582
fam166b
Uncharacterized protein.
    
  0.558
fam222a
Family with sequence similarity 222 member A.
    
   0.557
LOC106953003
Homeobox domain-containing protein.
    
 
 0.536
LOC106955369
Meis homeobox 1 b.
    
 
 0.536
pknox1
Pbx/knotted 1 homeobox 1.1.
    
 
 0.535
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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