sra1 protein (Poecilia latipinna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sra1

SRA1 domain-containing protein. (252 aa)

Predicted Functional Partners:

sec24c

0.850

sec24d

0.844

dcp1a

0.819

LOC106946659

0.770

LOC106959775

0.745

LOC106937386

0.745

tmem245

0.719

LOC106963973

0.677

LOC106941520

0.677

LOC106940417

0.675

Your Current Organism:

Poecilia latipinna

NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106937386	LOC106959775	ENSPLAP00000021671	ENSPLAP00000007481	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.544
LOC106937386	sec24c	ENSPLAP00000021671	ENSPLAP00000025237	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog C, COPII coat complex component.	0.993
LOC106937386	sec24d	ENSPLAP00000021671	ENSPLAP00000030365	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog D, COPII coat complex component.	0.991
LOC106937386	sra1	ENSPLAP00000021671	ENSPLAP00000001393	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SRA1 domain-containing protein.	0.745
LOC106940417	sra1	ENSPLAP00000001604	ENSPLAP00000001393	Pseudouridine synthase 1.	SRA1 domain-containing protein.	0.675
LOC106941520	sra1	ENSPLAP00000028740	ENSPLAP00000001393	D site albumin promoter binding protein a.	SRA1 domain-containing protein.	0.677
LOC106946659	sra1	ENSPLAP00000019591	ENSPLAP00000001393	Ubiquitin-conjugating enzyme E2T (putative).	SRA1 domain-containing protein.	0.770
LOC106959775	LOC106937386	ENSPLAP00000007481	ENSPLAP00000021671	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.544
LOC106959775	sec24c	ENSPLAP00000007481	ENSPLAP00000025237	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog C, COPII coat complex component.	0.993
LOC106959775	sec24d	ENSPLAP00000007481	ENSPLAP00000030365	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog D, COPII coat complex component.	0.990
LOC106959775	sra1	ENSPLAP00000007481	ENSPLAP00000001393	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SRA1 domain-containing protein.	0.745
LOC106963973	sra1	ENSPLAP00000021269	ENSPLAP00000001393	D site albumin promoter binding protein b.	SRA1 domain-containing protein.	0.677
dcp1a	sra1	ENSPLAP00000007154	ENSPLAP00000001393	Decapping mRNA 1A.	SRA1 domain-containing protein.	0.819
sec24c	LOC106937386	ENSPLAP00000025237	ENSPLAP00000021671	SEC24 homolog C, COPII coat complex component.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.993
sec24c	LOC106959775	ENSPLAP00000025237	ENSPLAP00000007481	SEC24 homolog C, COPII coat complex component.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.993
sec24c	sec24d	ENSPLAP00000025237	ENSPLAP00000030365	SEC24 homolog C, COPII coat complex component.	SEC24 homolog D, COPII coat complex component.	0.996
sec24c	sra1	ENSPLAP00000025237	ENSPLAP00000001393	SEC24 homolog C, COPII coat complex component.	SRA1 domain-containing protein.	0.850
sec24d	LOC106937386	ENSPLAP00000030365	ENSPLAP00000021671	SEC24 homolog D, COPII coat complex component.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.991
sec24d	LOC106959775	ENSPLAP00000030365	ENSPLAP00000007481	SEC24 homolog D, COPII coat complex component.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.990
sec24d	sec24c	ENSPLAP00000030365	ENSPLAP00000025237	SEC24 homolog D, COPII coat complex component.	SEC24 homolog C, COPII coat complex component.	0.996