Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106953271LSM family member 14B. (369 aa)    
Predicted Functional Partners:
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.937
LOC106946892
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.937
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 
 0.932
edc3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
    
 
 0.909
dcp2
Decapping mRNA 2.
    
 
 0.852
dcp1b
Decapping mRNA 1B.
    
 
 0.796
c1qbp
Complement component 1, q subcomponent binding protein.
    
   0.785
LOC106939414
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.726
gars1
Glycyl-tRNA synthetase.
    
   0.712
dcp1a
Decapping mRNA 1A.
   
 
 0.711
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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