STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106964812Collagen, type II, alpha 1a. (1482 aa)    
Predicted Functional Partners:
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.912
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.912
LOC106964138
Integrin beta; Belongs to the integrin beta chain family.
    
 0.912
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.911
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
  0.911
LOC106950752
Integrin beta; Belongs to the integrin beta chain family.
    
 0.908
LOC106955164
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.907
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.907
LOC106955062
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
    
 0.905
itga10
Integrin, alpha 10; Belongs to the integrin alpha chain family.
     
 0.905
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.