STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc4a1apSolute carrier family 4 member 1 adaptor protein. (754 aa)    
Predicted Functional Partners:
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
   0.611
osgep
Probable tRNA N6-adenosine threonylcarbamoyltransferase; Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. OSGEP likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity.
      
 0.549
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
   0.519
dnajc8
DnaJ (Hsp40) homolog, subfamily C, member 8.
    
   0.516
ENSPLAP00000000084
Small nuclear ribonucleoprotein polypeptide F.
    
   0.513
phf5a
PHD finger protein 5A.
    
   0.509
LOC106942144
Protein phosphatase 4, regulatory subunit 2b.
    
   0.485
LOC106934765
Uncharacterized protein.
    
   0.485
exosc9
Exosome component 9.
    
   0.479
prpf38a
Pre-mRNA processing factor 38A.
   
  
 0.465
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.