STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000001448Uncharacterized protein. (179 aa)    
Predicted Functional Partners:
pald1
Phosphatase domain containing paladin 1a.
      
 0.563
LOC106937625
TGF_BETA_2 domain-containing protein.
      
 0.520
ENSPLAP00000023074
Collagen and calcium binding EGF domains 1.
      
 0.519
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
   
 0.505
ENSPLAP00000011639
Fibrillar collagen NC1 domain-containing protein.
    
 0.495
ENSPLAP00000021946
Collagen, type XXVII, alpha 1b.
    
 0.495
thbs2
Thrombospondin 2a.
   
  0.476
thbs1
Thrombospondin 1b.
   
  0.476
LOC106960034
Thrombospondin 1a.
   
  0.476
adamts18
ADAM metallopeptidase with thrombospondin type 1 motif, 18.
     
 0.467
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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