STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itga9Integrin, alpha 9; Belongs to the integrin alpha chain family. (1017 aa)    
Predicted Functional Partners:
LOC106964138
Integrin beta; Belongs to the integrin beta chain family.
   
 0.981
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.975
tnr
Tenascin R (restrictin, janusin).
    
 0.966
ENSPLAP00000006573
Uncharacterized protein.
    
 0.963
vcam1
Vascular cell adhesion molecule 1b.
   
 0.954
ENSPLAP00000024504
Vasodilator stimulated phosphoprotein b.
     
 0.951
itgb3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.950
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.950
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.941
LOC106944581
Paxillin; Cytoskeletal protein involved in actin-membrane attachment at sites of cell adhesion to the extracellular matrix (focal adhesion). Belongs to the paxillin family.
    
 0.939
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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