STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106938080Si:dkey-240h12.4. (319 aa)    
Predicted Functional Partners:
becn1
Beclin 1, autophagy related.
    
 0.935
klhl20
Kelch-like family member 20.
    
 
 0.749
LOC106963247
Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 0.675
LOC106936200
Calmodulin.
    
 0.675
LOC106954010
Calmodulin.
    
 0.675
calm2
Calmodulin 2.
    
 0.675
ENSPLAP00000029102
Uncharacterized protein.
    
 0.640
unc5b
Unc-5 netrin receptor B.
    
 0.639
ENSPLAP00000014192
NDK domain-containing protein.
    
 
 0.577
ENSPLAP00000015949
Mindbomb E3 ubiquitin protein ligase 1.
    
 
 0.548
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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