Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPLAP00000001471RED_C domain-containing protein. (164 aa)    
Predicted Functional Partners:
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
   
 0.983
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.981
LOC106948266
Uncharacterized protein.
   
 0.961
mfap1
Microfibril associated protein 1.
   
 0.957
xab2
XPA binding protein 2.
   
  0.930
ZNF830
Zinc finger protein 830.
    
  0.923
rnf113a
Ring finger protein 113A.
    
  0.923
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
   0.920
SNIP1
Smad nuclear interacting protein 1.
    
   0.900
wbp11
WW domain binding protein 11.
   
  0.896
Your Current Organism:
Poecilia latipinna
NCBI taxonomy Id: 48699
Other names: Mollienesia latipinna, P. latipinna, sailfin molly
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